HL_4V83_127

3D structure

PDB id

4V83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 from the PSIV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GAAGCAACGC

Length

10 nucleotides

Bulged bases

4V83|1|CA|G|971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V83_127 not in the Motif Atlas

Homologous match to HL_4LFB_021

Geometric discrepancy: 0.2354

The information below is about HL_4LFB_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_97521.1

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

4V83|1|CA|G|963
4V83|1|CA|A|964
4V83|1|CA|A|965
4V83|1|CA|G|966
4V83|1|CA|C|967
4V83|1|CA|A|968
4V83|1|CA|A|969
4V83|1|CA|C|970
4V83|1|CA|G|971
4V83|1|CA|C|972

Current chains

Chain CA

ribosomal RNA 16S

Nearby chains

Chain CI

30S ribosomal protein S9

Chain CJ

30S ribosomal protein S10

Chain CV

domain 3 of PSIC IGR IRES RNA