HL_4V84_022

3D structure

PDB id

4V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GAAGCAACGC

Length

10 nucleotides

Bulged bases

4V84|1|AA|G|971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V84_022 not in the Motif Atlas

Homologous match to HL_4LFB_021

Geometric discrepancy: 0.215

The information below is about HL_4LFB_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50779.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4V84|1|AA|G|963
4V84|1|AA|A|964
4V84|1|AA|A|965
4V84|1|AA|G|966
4V84|1|AA|C|967
4V84|1|AA|A|968
4V84|1|AA|A|969
4V84|1|AA|C|970
4V84|1|AA|G|971
4V84|1|AA|C|972

Current chains

Chain AA

ribosomal RNA 16S

Nearby chains

Chain AI

30S ribosomal protein S9

Chain AJ

30S ribosomal protein S10

Chain AN

30S ribosomal protein S14 type Z

Chain AV

RNA (34-MER)