HL_4V84_111

3D structure

PDB id

4V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GGUAAUGGC

Length

9 nucleotides

Bulged bases

4V84|1|CA|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V84_111 not in the Motif Atlas

Homologous match to HL_4LFB_006

Geometric discrepancy: 0.0944

The information below is about HL_4LFB_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

4V84|1|CA|G|259
4V84|1|CA|G|260
4V84|1|CA|U|261
4V84|1|CA|A|262
4V84|1|CA|A|263
4V84|1|CA|U|264
4V84|1|CA|G|265
4V84|1|CA|G|266
4V84|1|CA|C|267

Current chains

Chain CA

ribosomal RNA 16S

Nearby chains

Chain CQ

30S ribosomal protein S17

Chain CT

30S ribosomal protein S20