HL_4V84_122

3D structure

PDB id

4V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GAUUAGAUACC

Length

11 nucleotides

Bulged bases

4V84|1|CA|U|793

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V84_122 not in the Motif Atlas

Homologous match to HL_4LFB_017

Geometric discrepancy: 0.0766

The information below is about HL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

4V84|1|CA|G|786
4V84|1|CA|A|787
4V84|1|CA|U|788
4V84|1|CA|U|789
4V84|1|CA|A|790
4V84|1|CA|G|791
4V84|1|CA|A|792
4V84|1|CA|U|793
4V84|1|CA|A|794
4V84|1|CA|C|795
4V84|1|CA|C|796

Current chains

Chain CA

ribosomal RNA 16S

Nearby chains

Chain CK

30S ribosomal protein S11

Chain CV

RNA (34-MER)

Chain DA

Large subunit ribosomal RNA; LSU rRNA