HL_4V87_088
3D structure
- PDB id
- 4V87 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure analysis of ribosomal decoding.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CGGUGAAAUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V87_088 not in the Motif Atlas
- Homologous match to HL_4LFB_015
- Geometric discrepancy: 0.1633
- The information below is about HL_4LFB_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_38491.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 12
Unit IDs
4V87|1|BA|C|689
4V87|1|BA|G|690
4V87|1|BA|G|691
4V87|1|BA|U|692
4V87|1|BA|G|693
4V87|1|BA|A|694
4V87|1|BA|A|695
4V87|1|BA|A|696
4V87|1|BA|U|697
4V87|1|BA|G|698
Current chains
- Chain BA
- 16S ribosomal RNA
Nearby chains
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain B1
- MRNA
- Chain BD
- Transfer RNA; tRNA
- Chain BJ
- 30S RIBOSOMAL PROTEIN S7
- Chain BN
- 30S RIBOSOMAL PROTEIN S11
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