HL_4V88_004

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUUCG

Length

5 nucleotides

Bulged bases

4V88|1|A1|U|133, 4V88|1|A1|C|135

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V88_004 not in the Motif Atlas

Homologous match to HL_5TBW_004

Geometric discrepancy: 0.0911

The information below is about HL_5TBW_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_86929.1

Basepair signature

cWW-F

Number of instances in this motif group

9

Unit IDs

4V88|1|A1|C|132
4V88|1|A1|U|133
4V88|1|A1|U|134
4V88|1|A1|C|135
4V88|1|A1|G|136

Current chains

Chain A1

25S rRNA

Nearby chains

Chain A5

Large subunit ribosomal RNA; LSU rRNA

Chain BN

60S ribosomal protein L15-A

Chain Bh

60S ribosomal protein L35-A

Chain DY

60S ribosomal protein L26-A