HL_4V88_020
3D structure
- PDB id
- 4V88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the eukaryotic ribosome at 3.0 A resolution.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- ACGUGCAAAU
- Length
- 10 nucleotides
- Bulged bases
- 4V88|1|A1|U|879, 4V88|1|A1|A|883, 4V88|1|A1|A|884
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V88_020 not in the Motif Atlas
- Homologous match to HL_5TBW_020
- Geometric discrepancy: 0.0462
- The information below is about HL_5TBW_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_39334.8
- Basepair signature
- cWW-cWS-tSW-F-F
- Number of instances in this motif group
- 7
Unit IDs
4V88|1|A1|A|876
4V88|1|A1|C|877
4V88|1|A1|G|878
4V88|1|A1|U|879
4V88|1|A1|G|880
4V88|1|A1|C|881
4V88|1|A1|A|882
4V88|1|A1|A|883
4V88|1|A1|A|884
4V88|1|A1|U|885
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain BB
- 60S ribosomal protein L3
- Chain BP
- 60S ribosomal protein L17-A
- Chain Bj
- 60S ribosomal protein L37-A
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