HL_4V88_027

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CAUGGAAGUCG

Length

11 nucleotides

Bulged bases

4V88|1|A1|A|1245

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V88_027 not in the Motif Atlas

Homologous match to HL_5TBW_027

Geometric discrepancy: 0.1312

The information below is about HL_5TBW_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

4V88|1|A1|C|1239
4V88|1|A1|A|1240
4V88|1|A1|U|1241
4V88|1|A1|G|1242
4V88|1|A1|G|1243
4V88|1|A1|A|1244
4V88|1|A1|A|1245
4V88|1|A1|G|1246
4V88|1|A1|U|1247
4V88|1|A1|C|1248
4V88|1|A1|G|1249

Current chains

Chain A1

25S rRNA

Nearby chains