HL_4V88_046

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UCUAAUUAAAA

Length

11 nucleotides

Bulged bases

4V88|1|A1|A|2138, 4V88|1|A1|A|2139, 4V88|1|A1|U|2140, 4V88|1|A1|A|2144

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V88_046 not in the Motif Atlas

Homologous match to HL_5TBW_046

Geometric discrepancy: 0.0504

The information below is about HL_5TBW_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43613.6

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

4V88|1|A1|U|2135
4V88|1|A1|C|2136
4V88|1|A1|U|2137
4V88|1|A1|A|2138
4V88|1|A1|A|2139
4V88|1|A1|U|2140
4V88|1|A1|U|2141
4V88|1|A1|A|2142
4V88|1|A1|A|2143
4V88|1|A1|A|2144
4V88|1|A1|A|2145

Current chains

Chain A1

25S rRNA

Nearby chains

Chain BA

60S ribosomal protein L2-A

Chain Bj

60S ribosomal protein L37-A