HL_4V88_098

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GACUCAACAC

Length

10 nucleotides

Bulged bases

4V88|1|A2|A|1196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V88_098 not in the Motif Atlas

Homologous match to HL_4V88_212

Geometric discrepancy: 0.084

The information below is about HL_4V88_212

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50779.1

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

4V88|1|A2|G|1188
4V88|1|A2|A|1189
4V88|1|A2|C|1190
4V88|1|A2|U|1191
4V88|1|A2|C|1192
4V88|1|A2|A|1193
4V88|1|A2|A|1194
4V88|1|A2|C|1195
4V88|1|A2|A|1196
4V88|1|A2|C|1197

Current chains

Chain A2

18S RIBOSOMAL RNA

Nearby chains

Chain AQ

40S ribosomal protein S16-A

Chain AU

40S ribosomal protein S20

Chain Ad

40S ribosomal protein S29-A

Chain Ah

Suppressor protein STM1