3D structure

PDB id
4V8A (explore in PDB, NAKB, or RNA 3D Hub)
Description
The structure of thermorubin in complex with the 70S ribosome from Thermus thermophilus.
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
UAUUGAAGCA
Length
10 nucleotides
Bulged bases
4V8A|1|AA|C|574
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4V8A_017 not in the Motif Atlas
Geometric match to HL_7RQB_018
Geometric discrepancy: 0.0818
The information below is about HL_7RQB_018
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_41998.1
Basepair signature
cWW-tWH-F-F-F
Number of instances in this motif group
69

Unit IDs

4V8A|1|AA|U|566
4V8A|1|AA|A|567
4V8A|1|AA|U|568
4V8A|1|AA|U|569
4V8A|1|AA|G|570
4V8A|1|AA|A|571
4V8A|1|AA|A|572
4V8A|1|AA|G|573
4V8A|1|AA|C|574
4V8A|1|AA|A|575

Current chains

Chain AA
23S ribosomal RNA

Nearby chains

Chain A5
50S ribosomal protein L32
Chain AE
50S ribosomal protein L3
Chain AP
50S ribosomal protein L15
Chain AV
50S ribosomal protein L21

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1325 s