HL_4V8A_023
3D structure
- PDB id
- 4V8A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of thermorubin in complex with the 70S ribosome from Thermus thermophilus.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- GGAUGCAAAC
- Length
- 10 nucleotides
- Bulged bases
- 4V8A|1|AA|U|747, 4V8A|1|AA|A|751
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V8A_023 not in the Motif Atlas
- Homologous match to HL_7RQB_023
- Geometric discrepancy: 0.0719
- The information below is about HL_7RQB_023
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_39334.6
- Basepair signature
- cWW-cWS-tSW-F-F
- Number of instances in this motif group
- 6
Unit IDs
4V8A|1|AA|G|744
4V8A|1|AA|G|745
4V8A|1|AA|A|746
4V8A|1|AA|U|747
4V8A|1|AA|G|748
4V8A|1|AA|C|749
4V8A|1|AA|A|750
4V8A|1|AA|A|751
4V8A|1|AA|A|752
4V8A|1|AA|C|753
Current chains
- Chain AA
- 23S ribosomal RNA
Nearby chains
- Chain A5
- 50S ribosomal protein L32
- Chain A7
- 50S ribosomal protein L34
- Chain AE
- 50S ribosomal protein L3
- Chain AW
- 50S ribosomal protein L22
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