HL_4V8A_189
3D structure
- PDB id
- 4V8A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of thermorubin in complex with the 70S ribosome from Thermus thermophilus.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- GAAGCAACGC
- Length
- 10 nucleotides
- Bulged bases
- 4V8A|1|DA|G|971
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V8A_189 not in the Motif Atlas
- Homologous match to HL_4LFB_021
- Geometric discrepancy: 0.1316
- The information below is about HL_4LFB_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_97521.1
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
4V8A|1|DA|G|963
4V8A|1|DA|A|964
4V8A|1|DA|A|965
4V8A|1|DA|G|966
4V8A|1|DA|C|967
4V8A|1|DA|A|968
4V8A|1|DA|A|969
4V8A|1|DA|C|970
4V8A|1|DA|G|971
4V8A|1|DA|C|972
Current chains
- Chain DA
- 16S ribosomal RNA
Nearby chains
- Chain DI
- 30S ribosomal protein S9
- Chain DJ
- 30S ribosomal protein S10
- Chain DM
- 30S ribosomal protein S13
- Chain DN
- 30S ribosomal protein S14
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