HL_4V8C_068

3D structure

PDB id

4V8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

4V8C|1|AA|G|2751

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8C_068 not in the Motif Atlas

Homologous match to HL_7RQB_066

Geometric discrepancy: 0.0704

The information below is about HL_7RQB_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.7

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

8

Unit IDs

4V8C|1|AA|C|2745
4V8C|1|AA|U|2746
4V8C|1|AA|G|2747
4V8C|1|AA|A|2748
4V8C|1|AA|A|2749
4V8C|1|AA|A|2750
4V8C|1|AA|G|2751
4V8C|1|AA|C|2752
4V8C|1|AA|A|2753
4V8C|1|AA|U|2754
4V8C|1|AA|C|2755
4V8C|1|AA|U|2756
4V8C|1|AA|A|2757
4V8C|1|AA|A|2758
4V8C|1|AA|G|2759

Current chains

Chain AA

RNA (2912-MER)

Nearby chains

Chain AH

50S ribosomal protein L6

Chain AM

50S ribosomal protein L13