3D structure

PDB id
4V8C (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).
Experimental method
X-RAY DIFFRACTION
Resolution
3.3 Å

Loop

Sequence
CGGUGAAAUG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4V8C_161 not in the Motif Atlas
Homologous match to HL_4LFB_015
Geometric discrepancy: 0.157
The information below is about HL_4LFB_015
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_75293.5
Basepair signature
cWW-F-F-F-F-F-F-F-F
Number of instances in this motif group
11

Unit IDs

4V8C|1|CA|C|689
4V8C|1|CA|G|690
4V8C|1|CA|G|691
4V8C|1|CA|U|692
4V8C|1|CA|G|693
4V8C|1|CA|A|694
4V8C|1|CA|A|695
4V8C|1|CA|A|696
4V8C|1|CA|U|697
4V8C|1|CA|G|698

Current chains

Chain CA
16S ribosomal RNA

Nearby chains

Chain AA
Large subunit ribosomal RNA; LSU rRNA
Chain C1
MRNA
Chain CD
Transfer RNA; tRNA
Chain CJ
30S RIBOSOMAL PROTEIN S7
Chain CN
30S RIBOSOMAL PROTEIN S11

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