3D structure

PDB id
4V8C (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).
Experimental method
X-RAY DIFFRACTION
Resolution
3.3 Å

Loop

Sequence
GAUUAGAUACC
Length
11 nucleotides
Bulged bases
4V8C|1|DA|U|793
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4V8C_205 not in the Motif Atlas
Homologous match to HL_4LFB_017
Geometric discrepancy: 0.0616
The information below is about HL_4LFB_017
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_38491.1
Basepair signature
cWW-F-F-F-F-F-F-F-F
Number of instances in this motif group
11

Unit IDs

4V8C|1|DA|G|786
4V8C|1|DA|A|787
4V8C|1|DA|U|788
4V8C|1|DA|U|789
4V8C|1|DA|A|790
4V8C|1|DA|G|791
4V8C|1|DA|A|792
4V8C|1|DA|U|793
4V8C|1|DA|A|794
4V8C|1|DA|C|795
4V8C|1|DA|C|796

Current chains

Chain DA
16S ribosomal RNA

Nearby chains

Chain BA
Large subunit ribosomal RNA; LSU rRNA
Chain D1
MRNA
Chain DC
Transfer RNA; tRNA
Chain DD
Transfer RNA; tRNA
Chain DN
30S RIBOSOMAL PROTEIN S11

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