HL_4V8E_087

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GCUCAAC

Length

7 nucleotides

Bulged bases

4V8E|1|BA|U|619

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8E_087 not in the Motif Atlas

Homologous match to HL_6CZR_085

Geometric discrepancy: 0.1573

The information below is about HL_6CZR_085

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20554.2

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

5

Unit IDs

4V8E|1|BA|G|617
4V8E|1|BA|C|618
4V8E|1|BA|U|619
4V8E|1|BA|C|620
4V8E|1|BA|A|621
4V8E|1|BA|A|622
4V8E|1|BA|C|623

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BG

30S RIBOSOMAL PROTEIN S4

Chain BS

30S RIBOSOMAL PROTEIN S16