HL_4V8E_125

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUUG

Length

4 nucleotides

Bulged bases

4V8E|1|CA|U|272, 4V8E|1|CA|U|273

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8E_125 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.2791

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81100.2

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

4V8E|1|CA|C|271
4V8E|1|CA|U|272
4V8E|1|CA|U|273
4V8E|1|CA|G|274

Current chains

Chain CA

RNA (2912-MER)

Nearby chains

Chain BA

Small subunit ribosomal RNA; SSU rRNA

Chain CK

50S ribosomal protein L9

Chain CZ

50S ribosomal protein L28