HL_4V8E_128

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GUGAAAGCC

Length

9 nucleotides

Bulged bases

4V8E|1|CA|G|354, 4V8E|1|CA|A|355, 4V8E|1|CA|A|356

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8E_128 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.0915

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

4V8E|1|CA|G|352
4V8E|1|CA|U|353
4V8E|1|CA|G|354
4V8E|1|CA|A|355
4V8E|1|CA|A|356
4V8E|1|CA|A|357
4V8E|1|CA|G|358
4V8E|1|CA|C|359
4V8E|1|CA|C|360

Current chains

Chain CA

RNA (2912-MER)

Nearby chains

Chain CF

50S ribosomal protein L4

Chain CU

50S ribosomal protein L24