HL_4V8E_137

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGAACAG

Length

7 nucleotides

Bulged bases

4V8E|1|CA|C|671

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8E_137 not in the Motif Atlas

Homologous match to HL_4WF9_021

Geometric discrepancy: 0.2692

The information below is about HL_4WF9_021

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

4V8E|1|CA|C|667
4V8E|1|CA|G|668
4V8E|1|CA|A|669
4V8E|1|CA|A|670
4V8E|1|CA|C|671
4V8E|1|CA|A|672
4V8E|1|CA|G|673

Current chains

Chain CA

RNA (2912-MER)

Nearby chains

Chain C6

50S ribosomal protein L33

Chain C8

50S ribosomal protein L35

Chain CO

50S ribosomal protein L15