HL_4V8E_139

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGUGAGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8E_139 not in the Motif Atlas

Homologous match to HL_7RQB_022

Geometric discrepancy: 0.0976

The information below is about HL_7RQB_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84085.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

15

Unit IDs

4V8E|1|CA|G|760
4V8E|1|CA|G|761
4V8E|1|CA|U|762
4V8E|1|CA|G|763
4V8E|1|CA|A|764
4V8E|1|CA|G|765
4V8E|1|CA|A|766
4V8E|1|CA|C|767

Current chains

Chain CA

RNA (2912-MER)

Nearby chains

Chain DA

Small subunit ribosomal RNA; SSU rRNA

Chain DR

30S RIBOSOMAL PROTEIN S15

Chain DT

30S RIBOSOMAL PROTEIN S17