HL_4V8E_148

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGAUGAC

Length

7 nucleotides

Bulged bases

4V8E|1|CA|G|1222

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8E_148 not in the Motif Atlas

Geometric match to HL_5TBW_022

Geometric discrepancy: 0.3626

The information below is about HL_5TBW_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

4V8E|1|CA|G|1218
4V8E|1|CA|G|1219
4V8E|1|CA|A|1220
4V8E|1|CA|U|1221
4V8E|1|CA|G|1222
4V8E|1|CA|A|1223
4V8E|1|CA|C|1224

Current chains

Chain CA

RNA (2912-MER)

Nearby chains