HL_4V8E_150

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GUGAGAAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8E_150 not in the Motif Atlas

Homologous match to HL_7RQB_033

Geometric discrepancy: 0.0744

The information below is about HL_7RQB_033

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_41998.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

69

Unit IDs

4V8E|1|CA|G|1328
4V8E|1|CA|U|1329
4V8E|1|CA|G|1330
4V8E|1|CA|A|1331
4V8E|1|CA|G|1332
4V8E|1|CA|A|1333
4V8E|1|CA|A|1334
4V8E|1|CA|U|1335
4V8E|1|CA|C|1336

Current chains

Chain CA

RNA (2912-MER)

Nearby chains

Chain C0

50S ribosomal protein L17

Chain C5

50S ribosomal protein L32

Chain CS

50S ribosomal protein L22