HL_4V8E_151

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGUCGUC

Length

7 nucleotides

Bulged bases

4V8E|1|CA|G|1372, 4V8E|1|CA|U|1376

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8E_151 not in the Motif Atlas

Homologous match to HL_7RQB_034

Geometric discrepancy: 0.0876

The information below is about HL_7RQB_034

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_46680.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

27

Unit IDs

4V8E|1|CA|G|1371
4V8E|1|CA|G|1372
4V8E|1|CA|U|1373
4V8E|1|CA|C|1374
4V8E|1|CA|G|1375
4V8E|1|CA|U|1376
4V8E|1|CA|C|1377

Current chains

Chain CA

RNA (2912-MER)

Nearby chains

Chain C0

50S ribosomal protein L17

Chain CS

50S ribosomal protein L22