HL_4V8E_156

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGUACG

Length

6 nucleotides

Bulged bases

4V8E|1|CA|U|1582

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8E_156 not in the Motif Atlas

Geometric match to HL_4V88_198

Geometric discrepancy: 0.3101

The information below is about HL_4V88_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

4V8E|1|CA|C|1580
4V8E|1|CA|G|1581
4V8E|1|CA|U|1582
4V8E|1|CA|A|1583
4V8E|1|CA|C|1584
4V8E|1|CA|G|1585

Current chains

Chain CA

RNA (2912-MER)

Nearby chains