HL_4V8E_166
3D structure
- PDB id
- 4V8E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GUAACUAUAAC
- Length
- 11 nucleotides
- Bulged bases
- 4V8E|1|CA|A|1936
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V8E_166 not in the Motif Atlas
- Geometric match to HL_5TBW_049
- Geometric discrepancy: 0.1432
- The information below is about HL_5TBW_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_84702.1
- Basepair signature
- cWW-F-F-tHW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
4V8E|1|CA|G|1933
4V8E|1|CA|U|1934
4V8E|1|CA|A|1935
4V8E|1|CA|A|1936
4V8E|1|CA|C|1937
4V8E|1|CA|U|1938
4V8E|1|CA|A|1939
4V8E|1|CA|U|1940
4V8E|1|CA|A|1941
4V8E|1|CA|A|1942
4V8E|1|CA|C|1943
Current chains
- Chain CA
- RNA (2912-MER)
Nearby chains
- Chain D1
- MRNA
- Chain DA
- Small subunit ribosomal RNA; SSU rRNA
- Chain DB
- TRNA-TYR
- Chain DC
- Transfer RNA; tRNA
Coloring options: