HL_4V8E_167

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

4V8E|1|CA|U|1978

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8E_167 not in the Motif Atlas

Homologous match to HL_5J7L_182

Geometric discrepancy: 0.1317

The information below is about HL_5J7L_182

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20167.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

4V8E|1|CA|G|1972
4V8E|1|CA|G|1973
4V8E|1|CA|U|1974
4V8E|1|CA|A|1975
4V8E|1|CA|A|1976
4V8E|1|CA|G|1977
4V8E|1|CA|U|1978
4V8E|1|CA|U|1979
4V8E|1|CA|C|1980

Current chains

Chain CA

RNA (2912-MER)

Nearby chains

Chain CN

50S ribosomal protein L14

Chain DA

Small subunit ribosomal RNA; SSU rRNA