HL_4V8E_168

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

4V8E|1|CA|A|2053, 4V8E|1|CA|A|2054, 4V8E|1|CA|G|2055

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8E_168 not in the Motif Atlas

Homologous match to HL_7RQB_050

Geometric discrepancy: 0.0806

The information below is about HL_7RQB_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.6

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

6

Unit IDs

4V8E|1|CA|G|2050
4V8E|1|CA|U|2051
4V8E|1|CA|G|2052
4V8E|1|CA|A|2053
4V8E|1|CA|A|2054
4V8E|1|CA|G|2055
4V8E|1|CA|A|2056
4V8E|1|CA|U|2057
4V8E|1|CA|G|2058
4V8E|1|CA|C|2059

Current chains

Chain CA

RNA (2912-MER)

Nearby chains

Chain C2

50S ribosomal protein L21

Chain CE

50S ribosomal protein L3