HL_4V8E_170

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGGAUG

Length

6 nucleotides

Bulged bases

4V8E|1|CA|G|2228, 4V8E|1|CA|G|2229

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8E_170 not in the Motif Atlas

Homologous match to HL_7RQB_052

Geometric discrepancy: 0.4402

The information below is about HL_7RQB_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_98426.1

Basepair signature

cWW-F

Number of instances in this motif group

6

Unit IDs

4V8E|1|CA|C|2227
4V8E|1|CA|G|2228
4V8E|1|CA|G|2229
4V8E|1|CA|A|2230
4V8E|1|CA|U|2231
4V8E|1|CA|G|2232

Current chains

Chain CA

RNA (2912-MER)

Nearby chains

Chain BG

30S RIBOSOMAL PROTEIN S4

Chain CD

50S ribosomal protein L2

Chain CZ

50S ribosomal protein L28