HL_4V8E_172

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUAAAAGGUAACG

Length

13 nucleotides

Bulged bases

4V8E|1|CA|A|2281, 4V8E|1|CA|C|2288

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8E_172 not in the Motif Atlas

Homologous match to HL_7RQB_054

Geometric discrepancy: 0.0962

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

4V8E|1|CA|C|2277
4V8E|1|CA|U|2278
4V8E|1|CA|A|2279
4V8E|1|CA|A|2280
4V8E|1|CA|A|2281
4V8E|1|CA|A|2282
4V8E|1|CA|G|2283
4V8E|1|CA|G|2284
4V8E|1|CA|U|2285
4V8E|1|CA|A|2286
4V8E|1|CA|A|2287
4V8E|1|CA|C|2288
4V8E|1|CA|G|2289

Current chains

Chain CA

RNA (2912-MER)

Nearby chains

Chain C3

50S ribosomal protein L27

Chain CB

5S ribosomal RNA; 5S rRNA

Chain CP

50S ribosomal protein L16