HL_4V8E_173

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGGACGGAAAUCC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8E_173 not in the Motif Atlas

Geometric match to HL_8KAH_003

Geometric discrepancy: 0.3256

The information below is about HL_8KAH_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89457.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

2

Unit IDs

4V8E|1|CA|G|2315
4V8E|1|CA|G|2316
4V8E|1|CA|G|2317
4V8E|1|CA|A|2318
4V8E|1|CA|C|2319
4V8E|1|CA|G|2320
4V8E|1|CA|G|2321
4V8E|1|CA|A|2322
4V8E|1|CA|A|2323
4V8E|1|CA|A|2324
4V8E|1|CA|U|2325
4V8E|1|CA|C|2326
4V8E|1|CA|C|2327

Current chains

Chain CA

RNA (2912-MER)

Nearby chains

Chain CB

5S ribosomal RNA; 5S rRNA

Chain CG

50S ribosomal protein L5