HL_4V8E_180

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUGUUCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8E_180 not in the Motif Atlas

Homologous match to HL_4WF9_058

Geometric discrepancy: 0.1393

The information below is about HL_4WF9_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

4V8E|1|CA|C|2564
4V8E|1|CA|U|2565
4V8E|1|CA|G|2566
4V8E|1|CA|U|2567
4V8E|1|CA|U|2568
4V8E|1|CA|C|2569
4V8E|1|CA|G|2570

Current chains

Chain CA

RNA (2912-MER)

Nearby chains

Chain DB

TRNA-TYR