HL_4V8E_184

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

4V8E|1|CA|G|2765, 4V8E|1|CA|C|2769

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8E_184 not in the Motif Atlas

Homologous match to HL_7A0S_065

Geometric discrepancy: 0.1328

The information below is about HL_7A0S_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53269.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

10

Unit IDs

4V8E|1|CA|C|2759
4V8E|1|CA|U|2760
4V8E|1|CA|G|2761
4V8E|1|CA|A|2762
4V8E|1|CA|A|2763
4V8E|1|CA|A|2764
4V8E|1|CA|G|2765
4V8E|1|CA|C|2766
4V8E|1|CA|A|2767
4V8E|1|CA|U|2768
4V8E|1|CA|C|2769
4V8E|1|CA|U|2770
4V8E|1|CA|A|2771
4V8E|1|CA|A|2772
4V8E|1|CA|G|2773

Current chains

Chain CA

RNA (2912-MER)

Nearby chains

Chain CH

50S ribosomal protein L6

Chain CM

50S ribosomal protein L13