HL_4V8F_079
3D structure
- PDB id
- 4V8F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GGUAAUGGC
- Length
- 9 nucleotides
- Bulged bases
- 4V8F|1|BA|G|266
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V8F_079 not in the Motif Atlas
- Homologous match to HL_4LFB_006
- Geometric discrepancy: 0.1406
- The information below is about HL_4LFB_006
- Detailed Annotation
- GNRA related
- Broad Annotation
- GNRA related
- Motif group
- HL_84299.4
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
4V8F|1|BA|G|259
4V8F|1|BA|G|260
4V8F|1|BA|U|261
4V8F|1|BA|A|262
4V8F|1|BA|A|263
4V8F|1|BA|U|264
4V8F|1|BA|G|265
4V8F|1|BA|G|266
4V8F|1|BA|C|267
Current chains
- Chain BA
- 16S ribosomal RNA
Nearby chains
- Chain BT
- 30S RIBOSOMAL PROTEIN S17
- Chain BW
- 30S RIBOSOMAL PROTEIN S20
Coloring options: