HL_4V8G_117

3D structure

PDB id

4V8G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of RMF bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAUUAGAUACC

Length

11 nucleotides

Bulged bases

4V8G|1|CA|U|793

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8G_117 not in the Motif Atlas

Homologous match to HL_4LFB_017

Geometric discrepancy: 0.0926

The information below is about HL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

4V8G|1|CA|G|786
4V8G|1|CA|A|787
4V8G|1|CA|U|788
4V8G|1|CA|U|789
4V8G|1|CA|A|790
4V8G|1|CA|G|791
4V8G|1|CA|A|792
4V8G|1|CA|U|793
4V8G|1|CA|A|794
4V8G|1|CA|C|795
4V8G|1|CA|C|796

Current chains

Chain CA

16S Ribosomal RNA

Nearby chains

Chain CK

30S Ribosomal Protein S11

Chain DA

Large subunit ribosomal RNA; LSU rRNA