HL_4V8I_112

3D structure

PDB id

4V8I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of YfiA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CGGUGAAAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8I_112 not in the Motif Atlas

Homologous match to HL_4LFB_015

Geometric discrepancy: 0.0597

The information below is about HL_4LFB_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

4V8I|1|CA|C|689
4V8I|1|CA|G|690
4V8I|1|CA|G|691
4V8I|1|CA|U|692
4V8I|1|CA|G|693
4V8I|1|CA|A|694
4V8I|1|CA|A|695
4V8I|1|CA|A|696
4V8I|1|CA|U|697
4V8I|1|CA|G|698

Current chains

Chain CA

16S Ribosomal RNA

Nearby chains

Chain CG

30S Ribosomal Protein S7

Chain CK

30S Ribosomal Protein S11

Chain CY

Ribosome-associated inhibitor A