HL_4V8J_041

3D structure

PDB id

4V8J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome ram mutation G347U.

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

GGGAAC

Length

6 nucleotides

Bulged bases

4V8J|1|BA|G|125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8J_041 not in the Motif Atlas

Homologous match to HL_7A0S_003

Geometric discrepancy: 0.1157

The information below is about HL_7A0S_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82710.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

4V8J|1|BA|G|123
4V8J|1|BA|G|124
4V8J|1|BA|G|125
4V8J|1|BA|A|126
4V8J|1|BA|A|127
4V8J|1|BA|C|128

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B7

50S ribosomal protein L34

Chain BX

50S ribosomal protein L23