HL_4V8J_114

3D structure

PDB id

4V8J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome ram mutation G347U.

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

GGGUAAUGGCC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8J_114 not in the Motif Atlas

Geometric match to HL_8GLP_091

Geometric discrepancy: 0.2061

The information below is about HL_8GLP_091

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50525.1

Basepair signature

cWW-cWW-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

4V8J|1|CA|G|253
4V8J|1|CA|G|254
4V8J|1|CA|G|255
4V8J|1|CA|U|256
4V8J|1|CA|A|257
4V8J|1|CA|A|258
4V8J|1|CA|U|259
4V8J|1|CA|G|260
4V8J|1|CA|G|261
4V8J|1|CA|C|262
4V8J|1|CA|C|263

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CQ

30S ribosomal protein S17

Chain CT

30S ribosomal protein S20