HL_4V8J_175

3D structure

PDB id

4V8J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome ram mutation G347U.

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

CCGCGAAGACAGCCUCGAGUGG

Length

22 nucleotides

Bulged bases

4V8J|1|DA|A|1046, 4V8J|1|DA|C|1053

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8J_175 not in the Motif Atlas

Geometric match to HL_8KAH_003

Geometric discrepancy: 0.31

The information below is about HL_8KAH_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89457.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

2

Unit IDs

4V8J|1|DA|C|1040
4V8J|1|DA|C|1041
4V8J|1|DA|G|1042
4V8J|1|DA|C|1043
4V8J|1|DA|G|1044
4V8J|1|DA|A|1045
4V8J|1|DA|A|1046
4V8J|1|DA|G|1047
4V8J|1|DA|A|1048
4V8J|1|DA|C|1049
4V8J|1|DA|A|1050
4V8J|1|DA|G|1051
4V8J|1|DA|C|1052
4V8J|1|DA|C|1053
4V8J|1|DA|U|1108
4V8J|1|DA|C|1109
4V8J|1|DA|G|1110
4V8J|1|DA|A|1111
4V8J|1|DA|G|1112
4V8J|1|DA|U|1113
4V8J|1|DA|G|1114
4V8J|1|DA|G|1115

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DH

50S ribosomal protein L6

Chain DZ

50S ribosomal protein L25