HL_4V8J_200

3D structure

PDB id

4V8J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome ram mutation G347U.

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

GGGACGGAAAUCC

Length

13 nucleotides

Bulged bases

4V8J|1|DA|A|2311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8J_200 not in the Motif Atlas

Geometric match to HL_6D12_002

Geometric discrepancy: 0.2591

The information below is about HL_6D12_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.5

Basepair signature

cWW-F-F

Number of instances in this motif group

26

Unit IDs

4V8J|1|DA|G|2302
4V8J|1|DA|G|2303
4V8J|1|DA|G|2304
4V8J|1|DA|A|2305
4V8J|1|DA|C|2306
4V8J|1|DA|G|2307
4V8J|1|DA|G|2308
4V8J|1|DA|A|2309
4V8J|1|DA|A|2310
4V8J|1|DA|A|2311
4V8J|1|DA|U|2312
4V8J|1|DA|C|2313
4V8J|1|DA|C|2314

Current chains

Chain DA

23S rRNA

Nearby chains

Chain CV

Transfer RNA; tRNA

Chain DB

5S ribosomal RNA; 5S rRNA

Chain DG

50S ribosomal protein L5