HL_4V8J_226

3D structure

PDB id

4V8J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome ram mutation G347U.

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

CUCAGUCGGUAGAG

Length

14 nucleotides

Bulged bases

4V8J|1|CW|U|16, 4V8J|1|CW|C|17, 4V8J|1|CW|G|18, 4V8J|1|CW|G|19, 4V8J|1|CW|U|20, 4V8J|1|CW|A|21

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8J_226 not in the Motif Atlas

Homologous match to HL_4V90_032

Geometric discrepancy: 0.506

The information below is about HL_4V90_032

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.4

Basepair signature

cWW-cWS-F

Number of instances in this motif group

14

Unit IDs

4V8J|1|CW|C|11
4V8J|1|CW|U|12
4V8J|1|CW|C|13
4V8J|1|CW|A|14
4V8J|1|CW|G|15
4V8J|1|CW|U|16
4V8J|1|CW|C|17
4V8J|1|CW|G|18
4V8J|1|CW|G|19
4V8J|1|CW|U|20
4V8J|1|CW|A|21
4V8J|1|CW|G|22
4V8J|1|CW|A|23
4V8J|1|CW|G|24

Current chains

Chain CW

tRNA-Phe

Nearby chains

Chain DA

Large subunit ribosomal RNA; LSU rRNA