HL_4V8N_106

3D structure

PDB id

4V8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

4V8N|1|BA|G|2751, 4V8N|1|BA|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8N_106 not in the Motif Atlas

Homologous match to HL_7RQB_066

Geometric discrepancy: 0.0841

The information below is about HL_7RQB_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.7

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

8

Unit IDs

4V8N|1|BA|C|2745
4V8N|1|BA|U|2746
4V8N|1|BA|G|2747
4V8N|1|BA|A|2748
4V8N|1|BA|A|2749
4V8N|1|BA|A|2750
4V8N|1|BA|G|2751
4V8N|1|BA|C|2752
4V8N|1|BA|A|2753
4V8N|1|BA|U|2754
4V8N|1|BA|C|2755
4V8N|1|BA|U|2756
4V8N|1|BA|A|2757
4V8N|1|BA|A|2758
4V8N|1|BA|G|2759

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain B9

50S RIBOSOMAL PROTEIN L36

Chain BH

50S RIBOSOMAL PROTEIN L6

Chain BN

50S RIBOSOMAL PROTEIN L13