HL_4V8P_004

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

GGUCAAC

Length

7 nucleotides

Bulged bases

4V8P|1|A1|U|132

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8P_004 not in the Motif Atlas

Homologous match to HL_8C3A_004

Geometric discrepancy: 0.5527

The information below is about HL_8C3A_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_86929.1

Basepair signature

cWW-F

Number of instances in this motif group

9

Unit IDs

4V8P|1|A1|G|130
4V8P|1|A1|G|131
4V8P|1|A1|U|132
4V8P|1|A1|C|133
4V8P|1|A1|A|134
4V8P|1|A1|A|135
4V8P|1|A1|C|136

Current chains

Chain A1

26S RRNA

Nearby chains

Chain AA

RIBOSOMAL PROTEIN L37

Chain BL

RIBOSOMAL PROTEIN L15

Chain BU

RPL35