HL_4V8P_008
3D structure
- PDB id
- 4V8P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T.thermophila 60S ribosomal subunit in complex with initiation factor 6.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.52 Å
Loop
- Sequence
- UUUGGGAUUG
- Length
- 10 nucleotides
- Bulged bases
- 4V8P|1|A1|A|283, 4V8P|1|A1|U|284
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V8P_008 not in the Motif Atlas
- Homologous match to HL_8C3A_008
- Geometric discrepancy: 0.1595
- The information below is about HL_8C3A_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_77436.2
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 23
Unit IDs
4V8P|1|A1|U|277
4V8P|1|A1|U|278
4V8P|1|A1|U|279
4V8P|1|A1|G|280
4V8P|1|A1|G|281
4V8P|1|A1|G|282
4V8P|1|A1|A|283
4V8P|1|A1|U|284
4V8P|1|A1|U|285
4V8P|1|A1|G|286
Current chains
- Chain A1
- 26S RRNA
Nearby chains
- Chain AC
- 60S RIBOSOMAL PROTEIN L36A
- Chain AU
- RPL13
- Chain BK
- 60S RIBOSOMAL PROTEIN L27A
- Chain BL
- RIBOSOMAL PROTEIN L15
Coloring options: