HL_4V8P_015
3D structure
- PDB id
- 4V8P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T.thermophila 60S ribosomal subunit in complex with initiation factor 6.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.52 Å
Loop
- Sequence
- UCUUGAAACA
- Length
- 10 nucleotides
- Bulged bases
- 4V8P|1|A1|C|672
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V8P_015 not in the Motif Atlas
- Homologous match to HL_5TBW_014
- Geometric discrepancy: 0.0987
- The information below is about HL_5TBW_014
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_43993.1
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
4V8P|1|A1|U|664
4V8P|1|A1|C|665
4V8P|1|A1|U|666
4V8P|1|A1|U|667
4V8P|1|A1|G|668
4V8P|1|A1|A|669
4V8P|1|A1|A|670
4V8P|1|A1|A|671
4V8P|1|A1|C|672
4V8P|1|A1|A|673
Current chains
- Chain A1
- 26S RRNA
Nearby chains
- Chain AT
- RPL29
- Chain BB
- RIBOSOMAL PROTEIN L3
- Chain BK
- 60S RIBOSOMAL PROTEIN L27A
- Chain BX
- 60S RIBOSOMAL PROTEIN L32
Coloring options: