HL_4V8P_019

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

CUCCG

Length

5 nucleotides

Bulged bases

4V8P|1|A1|U|789

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8P_019 not in the Motif Atlas

Geometric match to HL_5J7L_204

Geometric discrepancy: 0.1591

The information below is about HL_5J7L_204

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_48778.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

4V8P|1|A1|C|788
4V8P|1|A1|U|789
4V8P|1|A1|C|790
4V8P|1|A1|C|791
4V8P|1|A1|G|792

Current chains

Chain A1

26S RRNA

Nearby chains

Chain AQ

60S RIBOSOMAL PROTEIN L36

Chain AU

RPL13