HL_4V8P_023

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

UCUCAG

Length

6 nucleotides

Bulged bases

4V8P|1|A1|A|987

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8P_023 not in the Motif Atlas

Homologous match to HL_5TBW_022

Geometric discrepancy: 0.4213

The information below is about HL_5TBW_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

4V8P|1|A1|U|983
4V8P|1|A1|C|984
4V8P|1|A1|U|985
4V8P|1|A1|C|986
4V8P|1|A1|A|987
4V8P|1|A1|G|988

Current chains

Chain A1

26S RRNA

Nearby chains

Chain AC

60S RIBOSOMAL PROTEIN L36A

Chain AT

RPL29

Chain BK

60S RIBOSOMAL PROTEIN L27A