HL_4V8P_037

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

GAUUAUC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8P_037 not in the Motif Atlas

Homologous match to HL_8C3A_038

Geometric discrepancy: 0.5434

The information below is about HL_8C3A_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75033.1

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

4V8P|1|A1|G|1743
4V8P|1|A1|A|1744
4V8P|1|A1|U|1745
4V8P|1|A1|U|1746
4V8P|1|A1|A|1747
4V8P|1|A1|U|1748
4V8P|1|A1|C|1749

Current chains

Chain A1

26S RRNA

Nearby chains

Chain BO

RPL19

Chain BY

RPL37A