HL_4V8P_042

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

4V8P|1|A1|U|1949

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8P_042 not in the Motif Atlas

Homologous match to HL_8C3A_043

Geometric discrepancy: 0.0978

The information below is about HL_8C3A_043

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

4V8P|1|A1|C|1947
4V8P|1|A1|U|1948
4V8P|1|A1|U|1949
4V8P|1|A1|C|1950
4V8P|1|A1|G|1951
4V8P|1|A1|G|1952

Current chains

Chain A1

26S RRNA

Nearby chains

Chain BY

RPL37A