HL_4V8P_044

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

GAAGC

Length

5 nucleotides

Bulged bases

4V8P|1|A1|A|2107

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8P_044 not in the Motif Atlas

Homologous match to HL_8C3A_045

Geometric discrepancy: 0.2963

The information below is about HL_8C3A_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

4V8P|1|A1|G|2106
4V8P|1|A1|A|2107
4V8P|1|A1|A|2108
4V8P|1|A1|G|2109
4V8P|1|A1|C|2110

Current chains

Chain A1

26S RRNA

Nearby chains

Chain BO

RPL19

Chain BT

RPL24

Chain HJ

TRANSLATION INITIATION FACTOR EIF-6, PUTATIVE FAMILY PROTEIN